Can i put any bolt on neck onto my guitar?

I have a cheap Yamaha eg112 which is basically an imitation HSS american strat, I am familiar with wiring, pickups, and re finishing guitars so i decided to completely redo my guitar, i also want to install a floyd rose tremolo system, the body is already re routed but i dont want to destroy the neck, so i was going to buy a kramer or ibanez neck that is routed for the tremelo kit, will my intonation among other things still work with any neck? please any info you have will help